I've ran the tuxedo pipeline on some RNA Seq data I have and I'm confused about what the Locus is meant to represent. As you can see in my example below, they all have the same locus (a region of 19,241 bases), however, everything else about them is different, Tracking ID, Transcript ID, TSS ID, etc.
I thought it might have been linked to XLOC ID, but if there are multiple XLOX IDs per Locus then that doesn't make sense. Does anyone know how the "Locus" field is determined in the Tuxedo package?
The manual states : "Genomic coordinates for easy browsing to the object"