Question: Looking for individual genome browsers
0
gravatar for Mary
5.2 years ago by
Mary11k
Boston MA area
Mary11k wrote:

Hi folks--

Does anyone have knowledge of a mirror of the James Watson genome browser? Venter? Some other individuals?

There was an old gbrowse set up with these at CSHL, at this location: http://jimwatsonsequence.cshl.edu/ But that's been down lately.

Looking for a lightweight one, just for some teaching purposes. I know the data is available elsewhere (such as the UCSC Genome Variants track), but I'm looking for a graphical browser that's not too daunting for newbies, with limited data and tracks.

Any hints? Other good teaching ones?

 

personal genomics • 1.4k views
ADD COMMENTlink modified 3.6 years ago by info10 • written 5.2 years ago by Mary11k
2
gravatar for Ting-You Wang
5.2 years ago by
Hong Kong/The University of Hong Kong
Ting-You Wang80 wrote:

Try this one.  http://genoverse.org/   (lightweight and HTML5 based genome browser)

or  http://www.genomesunzipped.org/jbrowse/ (jbrowse based)

The main caveat is that you have to load your own customized data.

Gencode uses this one. http://www.biodalliance.org/

ADD COMMENTlink modified 5.1 years ago • written 5.2 years ago by Ting-You Wang80
1
gravatar for Matt Miossec
5.2 years ago by
Matt Miossec320
Universidad Andrés Bello
Matt Miossec320 wrote:

Would this be what you're looking for?

http://huref.jcvi.org/ (Craig Venter)

ADD COMMENTlink written 5.2 years ago by Matt Miossec320
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