Tool:Allele Frequency Calculator from 1000 Genomes Project
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7.3 years ago
Katie D'Aco ★ 1.0k

The 1000 Project released a tool that will calculate allele frequency by population in a single vcf file.  There is a web interface, and they recommend only querying 5mb of the genome at a time.  The tool is limited, but could be useful if you have a small region or set of genes you want to compare to your samples quickly.

vcf allele frequency MAF Tool • 3.0k views
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