The 1000 Project released a tool that will calculate allele frequency by population in a single vcf file. There is a web interface, and they recommend only querying 5mb of the genome at a time. The tool is limited, but could be useful if you have a small region or set of genes you want to compare to your samples quickly.
Tool: Allele Frequency Calculator from 1000 Genomes Project
5.7 years ago by
Katie D'Aco • 1000
Katie D'Aco • 1000 wrote:
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