Question: Are adapters removed for fastq files dumped from sra from GEO?
1
gravatar for Ming Tang
4.7 years ago by
Ming Tang2.4k
Houston/MD Anderson Cancer Center
Ming Tang2.4k wrote:

I want to know if the fastq files from GEO are quality controlled? like trim off the adapters and low quality reads?

Thank you

fastq • 2.0k views
ADD COMMENTlink modified 4.7 years ago by Devon Ryan88k • written 4.7 years ago by Ming Tang2.4k
1
gravatar for Devon Ryan
4.7 years ago by
Devon Ryan88k
Freiburg, Germany
Devon Ryan88k wrote:

In general they're not, though you'll find the odd exception.

ADD COMMENTlink written 4.7 years ago by Devon Ryan88k

Thank you, I will need to Fastqc and trim them...

ADD REPLYlink written 4.7 years ago by Ming Tang2.4k
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