Question about ExomeDepth's output
1
Hello Everybody,
I'm going crazy about ExomeDepth's output, I'm trying to understand what start.p
and end.p
means
Thanks a lot
R
ExomeDepth
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updated 2.9 years ago by
Ram
44k
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written 10.3 years ago by
BarbaraZ
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0
Suppose you have one CNV containg 4 reads of 120 bp each, see below:
start.p end.p type nexons start end chromosome id
745 748 deletion 4 33195196 33195367 chr7 7:33195196-33195367
start p.
determines the number of the first line where the above CNV starts
end. p
determines the number of the line where the above CNV ends.
These lines can be found in your bed.frame.
745: 7 33195195 33195314 7:33195195-33195314
7 33195196 33195315 7:33195196-33195315
7 33195247 33195366 7:33195247-33195366
748: 7 33195248 33195367 7:33195248-33195367
Hope it helps
KIZ
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link
updated 2.9 years ago by
Ram
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written 10.3 years ago by
Kizuna
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Could it be protein start and end perhaps?