Question: How to run Genscan on large files
0
gravatar for gayachit
5.0 years ago by
gayachit0
India
gayachit0 wrote:

Hi all,

I am currently working on an assembled eukaryotic genome. The file size is 2.5 GB. I have read that people use genscan for de-novo gene prediction. Currently i am unable to figure out how as genscan does not work well with multifasta and large files. I need to produce a .gff file. I used a perl script that was available i.e run_genscan_gff.pl. But that script also encounters the same problem of large file. How does everyone else do this prediction using Genscan?? Any help would be useful right now.

Thanks

ADD COMMENTlink modified 4.2 years ago by Biostar ♦♦ 20 • written 5.0 years ago by gayachit0

Did you download the local version of Genscan from here and ran on your data?

ADD REPLYlink written 4.9 years ago by Prakki Rama2.3k
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