Question: How do I find the associated genes of TFBS when I have the TFBS starting and end positions and sequences?
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gravatar for b.odwyer3
5.6 years ago by
b.odwyer30
Ireland
b.odwyer30 wrote:

My problem is I have a list of sequence for the binding sites of transcription factors I'm interested in but I want to find genes that are related to them. How do I find genes a certain amount of bp upstream or downstream of a tfbs?

chip-seq gene • 2.1k views
ADD COMMENTlink modified 5.6 years ago by Devon Ryan93k • written 5.6 years ago by b.odwyer30

If you only have the name of the TF, then there a plenty of tools to predict the targets of thsoe TFs. Google for "Transcription factor target genes tools". 

ADD REPLYlink written 5.6 years ago by Ashutosh Pandey12k
2
gravatar for Devon Ryan
5.6 years ago by
Devon Ryan93k
Freiburg, Germany
Devon Ryan93k wrote:

...among others.

ADD COMMENTlink written 5.6 years ago by Devon Ryan93k
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