Question: Python workflow/pipeline repository?
2
gravatar for racuna
3.9 years ago by
racuna20
United States
racuna20 wrote:

Is there a repository of Python workflows/pipelines? For example, Taverna workflows can be found at the myExperiment website. Is there anything similar for pure Python based workflows/pipelines? Even systems that use Python only for a glue language would be useful. (My actual interest is in seeing how Python scripts are used to control external tools.)

ADD COMMENTlink modified 3.9 years ago by Sean Davis24k • written 3.9 years ago by racuna20
6
gravatar for Sean Davis
3.9 years ago by
Sean Davis24k
National Institutes of Health, Bethesda, MD
Sean Davis24k wrote:

You might take a look at snakemake and the snakemake workflow repository:

https://bitbucket.org/johanneskoester/snakemake-workflows/src

ADD COMMENTlink written 3.9 years ago by Sean Davis24k
2
gravatar for Ido Tamir
3.9 years ago by
Ido Tamir4.8k
Austria
Ido Tamir4.8k wrote:

https://bcbio-nextgen.readthedocs.org/en/latest/

there are also python based workflow engines: snakemake, ruffus and other.

 

ADD COMMENTlink modified 3.9 years ago • written 3.9 years ago by Ido Tamir4.8k
0
gravatar for Ming Tang
3.9 years ago by
Ming Tang2.3k
Houston/MD Anderson Cancer Center
Ming Tang2.3k wrote:

Blacktie for RNA-seq

ADD COMMENTlink written 3.9 years ago by Ming Tang2.3k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 725 users visited in the last hour