Question: Does Anyone Know Of A Publication Reviewing Snp/Indel Finding Algorithms For Ngs Data?
3
gravatar for Travis
8.2 years ago by
Travis2.8k
USA
Travis2.8k wrote:

Hi all,

Is anyone aware of a good publication that reviews current methods for detecting SNPs/Indels from next gen sequencing data? I have done some searching but so far in vain. It would be great to get an overview of the various methods and their pros and cons.

Thanks in advance.

ADD COMMENTlink modified 7.6 years ago by Thomas720 • written 8.2 years ago by Travis2.8k
7
gravatar for Thomas
8.2 years ago by
Thomas720
Copenhagen, DK
Thomas720 wrote:

The following link is a very nice review of SNP calling from NGS.

enjoy

http://www.nature.com/nrg/journal/v12/n6/full/nrg2986.html

ADD COMMENTlink written 8.2 years ago by Thomas720
1

Nice one - thanks!

ADD REPLYlink written 8.2 years ago by Travis2.8k
1

If you want details of the algorithms behind a specific tools keep an eye on: https://github.com/lh3/smtl-paper. That's the incoming samtools paper.As you know, one of the most used tools for, among other things, calling snps with nextgen data.

ADD REPLYlink modified 20 days ago by RamRS24k • written 8.2 years ago by Drio910

@drio - I think this paper is out now: http://www.ncbi.nlm.nih.gov/pubmed/21903627

ADD REPLYlink written 7.6 years ago by Casey Bergman18k
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