Question: Illumina NGS datasets for normal tissue in particular prostate
1
gravatar for dan.brewer
4.9 years ago by
dan.brewer50
United Kingdom
dan.brewer50 wrote:

Does anyone know of any Illumina whole genome or exome sequecning data, that is publically available, for normal tissue? In particular prostate tissue.

Thanks

dataset next-gen wgs wxs • 1.3k views
ADD COMMENTlink modified 4.3 years ago by Biostar ♦♦ 20 • written 4.9 years ago by dan.brewer50

Have you checked the European read archive or SRA/GEO?

ADD REPLYlink written 4.9 years ago by Devon Ryan90k

I've had a look at SRA without much luck, but that might be my searching ability.

ADD REPLYlink written 4.9 years ago by dan.brewer50

I am just curious. How would you like to use such genomic datasets? The genome in normal prostate cells wouldn't be different from genome in any other cells. Or are you interested in performing some kind of normalization?

ADD REPLYlink written 4.9 years ago by madk00k340
0
gravatar for komal.rathi
4.9 years ago by
komal.rathi3.4k
Children's Hospital of Philadelphia, Philadelphia, PA
komal.rathi3.4k wrote:

I think you could find some at http://www.ncbi.nlm.nih.gov/sra using the search query: "whole genome sequencing AND prostate AND Illumina" or "Exome sequencing AND prostate AND Illumina". Or you can build a query like: "(((Whole genome Sequencing) OR Exome sequencing) AND Prostate) AND Illumina"

ADD COMMENTlink modified 4.9 years ago • written 4.9 years ago by komal.rathi3.4k
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