Calculate reciprocal overlap for thousands of samples
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7.3 years ago

I have around 20k samples with BED files. How can I calculate reciprocal overlap for each segment? I want to find all segments with 50% reciprocal overlap or better. 

overlap perl bedtools cnv • 2.4k views
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5.6 years ago
ebrown1955 ▴ 320

You can use bedtools intersect for this. http://bedtools.readthedocs.org/en/latest/

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