I am having problem with the input file format for Haploview. My samples are unrelated individuals so I don't have any linkage or pedigree information. I do have the hapmap file that contains the position, chromosome information of each SNP and the alleles in each individual.
As I 'm new to this software, can anyone tell me what kind of format I should convert my SNP file to and what is the best way to infer haplotypes?
Any help would be tremendously appreciated!!!