Question: How to filter structural variants in a vcf file on size
0
gravatar for Abdel
4.8 years ago by
Abdel340
Amsterdam
Abdel340 wrote:

I have a vcf file with structural variants (mainly deletions), and I want to filter out only deletions with a specific size (>10kb for example) and write those deletions to a separate vcf file. How can I do this?

ADD COMMENTlink modified 19 months ago by Biostar ♦♦ 20 • written 4.8 years ago by Abdel340
2
gravatar for Ashutosh Pandey
4.8 years ago by
Philadelphia
Ashutosh Pandey11k wrote:

Similar question answered already here:

Filtering Gatk Indel Output Length 20+

 

ADD COMMENTlink modified 4.8 years ago • written 4.8 years ago by Ashutosh Pandey11k

Thank you very much!

ADD REPLYlink written 4.8 years ago by Abdel340
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