Question: How to filter structural variants in a vcf file on size
0
gravatar for Abdel
5.9 years ago by
Abdel360
Amsterdam
Abdel360 wrote:

I have a vcf file with structural variants (mainly deletions), and I want to filter out only deletions with a specific size (>10kb for example) and write those deletions to a separate vcf file. How can I do this?

ADD COMMENTlink modified 2.7 years ago by Biostar ♦♦ 20 • written 5.9 years ago by Abdel360
2
gravatar for Ashutosh Pandey
5.9 years ago by
Philadelphia
Ashutosh Pandey12k wrote:

Similar question answered already here:

Filtering Gatk Indel Output Length 20+

 

ADD COMMENTlink modified 5.9 years ago • written 5.9 years ago by Ashutosh Pandey12k

Thank you very much!

ADD REPLYlink written 5.9 years ago by Abdel360
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