Question: assemble your own karyotype file
1
gravatar for cdwilliam524
3.3 years ago by
cdwilliam52430
United States
cdwilliam52430 wrote:

Hello,

Could anyone tell me how I could assemble my own karyotype file for circos plot? I am working on a bacteria project. The species is called Candidatus Kuenenia stuttgartiensis, which belongs to phylum/Clade Planctomycetes. I could not find the data from stuttgartiensis in UCSC table. I googled Ca. K stuttgartiensis's genome as well but found nothing. I combined all the contigs from this source and use it as the reference genome.

I have finished mapping through bwa, formatting through Samtools and merging overlapping sequences and generating coverage report through BEDTools.

Thanks in advance!

Will

ADD COMMENTlink modified 3.3 years ago by Biostar ♦♦ 20 • written 3.3 years ago by cdwilliam52430

got anything? I am stuck on the same thing. Converting a FASTA to a karyotype file

ADD REPLYlink modified 16 months ago • written 16 months ago by The Last Word100
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