Haploview file upload (plink format) error
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7.3 years ago
peris ▴ 120

I have done targeted exome sequencing and generated vcf file and thereafter used plink. Now I am trying to generate a Manhattan plot using haploview uploading the file *.model and *.map. While trying so I am getting an error "Incompatible chromosome for marker. on line 16 22 1" However, if I try to do same for each chromosme, its working. Can someone please explain why this error is.

haploview • 2.7k views
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