Question: Downloading all eucaryote mitochondrial genomes
gravatar for Eric Normandeau
5.0 years ago by
Quebec, Canada
Eric Normandeau10k wrote:

I would like to download all the complete sequences of the mitochondrial genomes available for eucaryotes. I thought that would be straight forward, and it probably is, but a GenBank search in Nucleotide using mitochondrion, complete genome for the search terms returns 43720 hits, most of which are not mitochondrion genomes.

Are there mitochondrion specific databases or a better approach to find these mitochondrion sequences?

dna databases mitochondrion • 3.4k views
ADD COMMENTlink modified 4.7 years ago by fernie.penaloza10 • written 5.0 years ago by Eric Normandeau10k
gravatar for Neilfws
5.0 years ago by
Sydney, Australia
Neilfws48k wrote:

I tried searching the NCBI Genome database with the term txid2759[Organism:exp] (eucaryotes). At the top of the results page is a link "See also 4407 organelle- and plasmid-only records matching your search". I guess many of those are mitochondria (some will be chloroplast); not sure of the next step best filter for mitochondria-only.

ADD COMMENTlink written 5.0 years ago by Neilfws48k

Thank you Neil, I'll investigate in this direction.

ADD REPLYlink written 5.0 years ago by Eric Normandeau10k
gravatar for fernie.penaloza
4.7 years ago by
fernie.penaloza10 wrote:


You can use their "genomes" site.

At the right you can download a list of the accession IDs, by now there are ~5065.

ADD COMMENTlink written 4.7 years ago by fernie.penaloza10
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