Question: To-date gene list of MAPK signaling pathway?
0
gravatar for pmedi
6.4 years ago by
pmedi40
Germany
pmedi40 wrote:

Hi everyone,

I'm looking for an actualized gene list of the MAPK signaling pathway (and other signaling cascades, too). I have microarray data, which I want to narrow to specific signaling cascades before I go to a gene ontology analysis. Does somebody know were can I get such a list?  I tried to look at Reactome, but it is too branched in subpathways for my purposes. I also found the "GeneAssist Pathway Atlas", but I would like to have a more "independent" source. Thanks!

ADD COMMENTlink modified 6.3 years ago by Neilfws49k • written 6.4 years ago by pmedi40
1
gravatar for Neilfws
6.3 years ago by
Neilfws49k
Sydney, Australia
Neilfws49k wrote:

You can use the TogoWS REST service to query KEGG pathways for genes. To get genes in JSON format for the human MAPK pathway:

curl http://togows.dbcls.jp/entry/pathway/hsa04010/genes.json
ADD COMMENTlink written 6.3 years ago by Neilfws49k

@Neilfws Thanks! I will try it. 

ADD REPLYlink written 6.3 years ago by pmedi40
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