I just started to learn Biopython. Please help me with this.
Compare both genomes NC_019495.1 and NC_019491.1 on a nucleotide level. For that purpose I have to iterate over both genomes with a meaningful window-size. For every window I got to save the window start position. For each window in genome A, how to find exact matches in genome B and save the corresponding position. I should have for every window two coordinates. Plot them in a scatterplot and create a syntenic plot. Can anyone help me with this.
Thanks a lot.