Question: How to generate pretty bedgraph tracks ( publication quality)
0
gravatar for aditi.qamra
5.2 years ago by
aditi.qamra260
Toronto
aditi.qamra260 wrote:

Hi,

This question is more around visualisation tools/techniques. A lot of papers have very beautiful bedgraph track figures specially the gene annotation bit below them and those sort of figures just dont seem possible to generate from the UCSC browser track. At the end, the refseq ( or ensembl) transcript structure for the gene always looks a little clunky. Was wondering if there is any specific tool/browser that people use to generate better looking bedgraph track figures ?

Thanks !

bedgraphs visualisation • 3.1k views
ADD COMMENTlink modified 5.2 years ago by Pierre Lindenbaum123k • written 5.2 years ago by aditi.qamra260
1
gravatar for Pierre Lindenbaum
5.2 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum123k wrote:

See "How can I take a screen shot of a Genome Browser track display for publication?" https://genome.ucsc.edu/FAQ/FAQcite.html#cite2

you can import & edit Postscript with inkscape.org

ADD COMMENTlink written 5.2 years ago by Pierre Lindenbaum123k

I see. I always used to right click on the browser and use the view image option,save it as a jpg and try and edit in Illustrator. I've never really worked with .eps formats or Inkscape. Will see if I can make the transcript structures look less pixelated and clunky and just less clustered using the above ( an issue when scaling down the images). thanks !

ADD REPLYlink modified 5.2 years ago • written 5.2 years ago by aditi.qamra260
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