Entering edit mode
9.7 years ago
sryan6
•
0
I have converted a vcf file to the plink format
plink --file Variants --allow-no-sex
plink --file Variants --recodeA --out VariantsA --allow-no-sex
plink --file Variants --recode12 --out Variants12 --allow-no-sex
and tried to read these files into R using:
plink.data <- read.PLINK(file="VariantsA.raw", parallel=FALSE)
but get the following error
Error in checkAtAssignment("SNPbin", "ploidy", "numeric") :
assignment of an object of class "numeric" is not valid for @'ploidy' in an object of class "SNPbin"; is(value, "integer") is not TRUE
Any help on what might be causing this would be much appreciated. I have looked through the vcf, ped, and raw file but can't seem to find anything wrong