Hi
I am trying to do "self-organizing tree algorithm" using Package ‘clValid’.
I practiced sample data (mouse), and I could do it.
However, I can not extract genes from each cluster.(for example, 45 genes from cluster2 in the following example )
If there are anybody familiar with this package, please teach me how to do it.
Thank you in advance!
Regards,
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library(clValid)
data(mouse)
express <- mouse[,c("M1","M2","M3","NC1","NC2","NC3")]
rownames(express) <- mouse$ID
sotaCl <- sota(as.matrix(express), 4)
names(sotaCl)
sotaCl
plot(sotaCl)
plot(sotaCl, cl=2)
Dear Dario Garvan
Thank you very much!