I am new to ipython and biopython and I have a question regarding comparison of proteins based on their location and similarity.The question is as follows
- create a plot based on proteins, their location and their similarity. Please iterate over your genome, extract the protein sequences from NC_019495.1 and NC_019491.1 and compare them with each other and create a scatterplot.
How can I extract proteins from the genome sequence.Could you suggest me the code to extract it.also to compare the similarities.I tried Biopython pairwise2 module but not working.
Could anyone please give suggestions!!