How to find positions of splice sites?
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7.3 years ago

I want to find positions of splice sites for a particular human gene. How and where can I find them? And what is the best way to find them for not-human not-model organisms?

splicing • 2.8k views
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7.3 years ago

The simplest method would be to just download that gene's annotation from biomart (obviously, these may not be complete). For a non-model organism, without doing some wet-bench experiments, you're left with looking at whatever genomic/transcriptomic information is available for it.

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I could not find in the biomart database splice site for the spicies, which I was looking for.

In result I found this article, http://nar.oxfordjournals.org/content/28/21/4364.full will keep reading.

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