First of all, I have searched similar topics and I have not found what I am looking for. Maybe I didnt search well enough, but... at least I tried, I swear! ^^
I have a list of genes with their respective Entrez IDs that I can convert to any ID needed, and I would like to know if it is possible to query each of them to a database (I am thinking on Reactome and Kegg, mainly). I do not want to do an enrichment analysis, I just want to know in which pathway(s) is involved each one of them, and to retrieve that information.
I would like to automatize this through a Python script. Is it possible? Which are the established solutions?
Thank you very much for your help.
Finally I decided to use mygene, and it worked really well. Thank you very much!!
I'm thinking of using data from COSMIC database too. I would love to use myvariant.info too for this, but it seems it is still developing, so I guess I will have to use the Ensembl API.
(I guess you are one of the involved in the development of mygene and myvariant, as I found you in Github :P, so... congratulations and good luck! :) )
The python client for myvariant.info just became available, and COSMIC is one of the data sources accessible with the client.