Question: protein domain download
0
gravatar for siyu
5.3 years ago by
siyu130
China
siyu130 wrote:

where can I download the protein domain included in a gene set? can you help me

gene • 1.7k views
ADD COMMENTlink written 5.3 years ago by siyu130
0
gravatar for mikhail.shugay
5.3 years ago by
mikhail.shugay3.4k
Czech Republic, Brno, CEITEC
mikhail.shugay3.4k wrote:

Try using InterPro @ Ensembl biomart (http://www.ensembl.org/biomart/). Upload your list of genes as filter and select desired protein feature attributes.

(edit: corrected link)

ADD COMMENTlink modified 5.3 years ago • written 5.3 years ago by mikhail.shugay3.4k

so how can I find the position of domain in a protein sequence??

ADD REPLYlink written 5.3 years ago by siyu130

You can upload your domains to http://www.ebi.ac.uk/interpro/biomart/martview/ and extract parent gene id and amino acid coordinates.

ADD REPLYlink written 5.3 years ago by mikhail.shugay3.4k
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