Question: Database of HERV integration locations
1
gravatar for Will
4.5 years ago by
Will4.5k
United States
Will4.5k wrote:

Does anyone know of a database of integration sites of known Human Endogenous Retroviruses (HERVs). I've come across this resources (http://herv.img.cas.cz/) which came from this paper (http://nar.oxfordjournals.org/content/32/suppl_1/D50.abstract) in 2003 but the data behind the website is missing. 

I could probably take their method and scan the genome myself, but a citable database would make everything easier.

database • 1.9k views
ADD COMMENTlink modified 4.5 years ago by Jeremy Leipzig18k • written 4.5 years ago by Will4.5k
2
gravatar for Jeremy Leipzig
4.5 years ago by
Philadelphia, PA
Jeremy Leipzig18k wrote:

Your best bet might be the rmsk table in UCSC

Repeats -> Repeatmasker -> rmsk

http://genome.ucsc.edu/cgi-bin/hgTables

the type column will show "ERV"

ADD COMMENTlink written 4.5 years ago by Jeremy Leipzig18k
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