Question: Sequence to Protein interaction network
1
gravatar for Ammu
5.8 years ago by
Ammu50
Sri Lanka
Ammu50 wrote:

I want to get the protein- protein interaction network from given sequences . Is there any tools for that except STRING ? 

ADD COMMENTlink modified 5.8 years ago by russhh5.3k • written 5.8 years ago by Ammu50

what species are your sequences from?

ADD REPLYlink written 5.8 years ago by russhh5.3k

From human for BRCA 1 and BRCA 2 .. 

ADD REPLYlink written 5.8 years ago by Ammu50
4
gravatar for russhh
5.8 years ago by
russhh5.3k
UK, U. Glasgow
russhh5.3k wrote:

You should really use entrez ids or hgnc symbols instead of sequence data. There is considerable information about interaction partners for these proteins within thebiogrid and ncbi/gene if you don't want to use STRING.

ADD COMMENTlink written 5.8 years ago by russhh5.3k

Thank you :)

ADD REPLYlink written 5.7 years ago by Ammu50
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