Question: Gene prediction tool
1
gravatar for MAPK
4.7 years ago by
MAPK1.4k
United States
MAPK1.4k wrote:

Hi,

I have genomic scaffolds for highly conserved gene family from different animal species. I was able to do tblastn and identify the putative sequences using their orthologs that are already identified/published. I now need to predict the whole gene region using those scaffolds. In most cases the gene is within the same scaffold, but there are some genes that are extended in different scaffolds. Is there any program that can easily predict a gene distributed in different regions of different scaffolds?  Thank you

gene prediction • 1.6k views
ADD COMMENTlink modified 4.7 years ago by mangfu100700 • written 4.7 years ago by MAPK1.4k
0
gravatar for mangfu100
4.7 years ago by
mangfu100700
Korea, Republic Of
mangfu100700 wrote:

AUGUSTUS is a modern gene prediction pipeline.

I strongly recommend you to use it.

ADD COMMENTlink modified 4.7 years ago • written 4.7 years ago by mangfu100700
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1388 users visited in the last hour