I have two populations and one of them shows very low genetic diversity compared to another one. I used Lositan software to detect the Fst outliers in both populations together. Now I am thinking to use Lositan only for each populations separately?
The assumption is I expect that one of my population is being subjected to selection more than the another one. So, I want to check the Fst outliers in each populations separately then I could chek my assumption.
I am not sure if my idea right or wrong because it is my second day to use Lositan.
I hope that my idea is clear and some one could help.