Question: eQTL database with information of which allele is associated with higher expression?
1
gravatar for ewd
4.7 years ago by
ewd10
United States
ewd10 wrote:

I am looking for eQTL data with relative expression levels for different alleles. However, I can't find such information in any eQTL database I have tried since only p-values are reported. Does anyone know any place to get this information rather than resorting to raw data? 

Thanks,

snp • 1.9k views
ADD COMMENTlink modified 4.7 years ago by Ana30 • written 4.7 years ago by ewd10
2
gravatar for Ana
4.7 years ago by
Ana30
London
Ana30 wrote:

You don't specify oraganism...but for humans you would try Genevar (https://www.sanger.ac.uk/resources/software/genevar/)

You can plot the associations and they show the direcction. but you have to check one by one, and for some studies they say it is disable.

 

 

ADD COMMENTlink written 4.7 years ago by Ana30
2

For mouse, you can try Genenetwork.org. It has expression data sets for multiple tissues. You can perform the eQTL mapping or download the precomputed data through Genome Graph feature on their website. 

ADD REPLYlink written 4.7 years ago by Ashutosh Pandey11k
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