eQTL database with information of which allele is associated with higher expression?
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9.7 years ago
ewd ▴ 10

I am looking for eQTL data with relative expression levels for different alleles. However, I can't find such information in any eQTL database I have tried since only p-values are reported. Does anyone know any place to get this information rather than resorting to raw data?

Thanks

SNP • 2.8k views
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9.7 years ago
Ana ▴ 30

You don't specify organism...but for humans you would try Genevar

You can plot the associations and they show the direction. but you have to check one by one, and for some studies they say it is disable.

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For mouse, you can try Genenetwork.org. It has expression data sets for multiple tissues. You can perform the eQTL mapping or download the precomputed data through Genome Graph feature on their website.

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