I would like to display the data from results in a graphical way rfom the functional pathway analysis.
I have tried several R packages like KEGGgraph , PAthview, But they have there own input data format.
My data looks like this, where first col is genes and second column is the pathway enriched .
|ALDH7A1; BPGM;||hsa00010: Glycolysis / Gluconeogenesis|
|ALDH7A1;||hsa00053: Ascorbate and aldarate metabolism|
|ACSL6; ALDH7A1;||hsa00071: Fatty acid metabolism|
|SOAT2;||hsa00100: Steroid biosynthesis|
|PDE7B; GMPR; PDE4B;||hsa00230: Purine metabolism|
|UPP1;||hsa00240: Pyrimidine metabolism|
|ALAS2; ALDH7A1; BPGM;||hsa00260: Glycine|
|TST;||hsa00270: Cysteine and methionine metabolism|
|ALDH7A1; BCAT1;||hsa00280: Valine|
|ALDH7A1;||hsa00300: Lysine biosynthesis|
|ALDH7A1;||hsa00310: Lysine degradation|
So in there are many pathways were more than one gene is involved .. For this kind of data is there any available method for data display I want it in pathway graphs not as bar plots.
Thank you so much for help