Hello I´am trying to found some R package to plot my data properly. Basicaly, I have some genomic regions interacting. At first glance the
GenomeGraphs R packages fits to my propose. However, I do not found a way to plot what I want to expose, in this packages.
I produced one example of my data structure with the necessary data and one expected plot.
My data to first line == region:
Rstart Rend type 90 180 Neighborhood 181 724 CNVR 725 805 Neighborhood
My data to second line == probes:
PPosition 185 205 285 290 305 385 410 455 505 555 595
My data to third line == states:
Sstart Send type tag 185 285 Loss (1n) tag_1 385 455 Gain (3n) tag_2 505 595 Gain (3n) tag_3
My data to fourth line ==
Gstart Gend Gname 225 390 KPN1 440 495 KPN2 630 740 KPN3
My data to relations between states versus genes:
tag gene tag_1 KPN1 tag_2 KPN1 tag_2 KNP3 tag_3 KPN3
A expected plot to the example:
Any ideas or solutions will be very useful. Thank you very much. Cheers!