I'm a bioinformatician, new in the community and quite new about working with the bash commands.
I recently encountered a very trivial error message but for me the issue is a bit complex to fix.
Briefly, when I launch a script with the 'qsub' command (from the master node ) the job does not work and I find the following error message in the 'log' file:
Fatal error: cannot open file '/data/users/genethongandolfi/scripts/multi454.mse/multi454fasta.manip.r': No such file or directory
This sounds quite strange for me since the path to the script file called 'multi454fasta.manip.r' is correct (I already checked with the 'find' command).
I also tried to move the script into the home directory /home/genethongandolfi/scripts and the error message changes: the job runs because the system finds the script, but not the input file in the usual path /data/users/genethongandolfi/analysis/etc... . It seems to be something for which the "/data/users/..." path is not recognized when I launch a job.
Thanks a lot in advance if somebody can help me, I don't know how to fix it..