Question: Why is there such large variablity in ChiaPet datasets
0
gravatar for henry-keen
5.1 years ago by
henry-keen10
United States
henry-keen10 wrote:

I have downloaded the Encode Chia-Pet data from UCSC as bed files and removed duplicate entries from the datasets.  My question is why is there such large variability between cell lines and replicates in the number of interacting genomic regions.  For example, in some datasets the number of regions is only a few thousand, whereas in others the number is greater than 100,000.  Please let me know I you have any ideas about this.  Thanks.

sequence • 980 views
ADD COMMENTlink written 5.1 years ago by henry-keen10
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1507 users visited in the last hour