BWA MEM mate pair rescue
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8.3 years ago

Greetings,

Can someone spell out what this option means? I have several guesses, but would rather ask than guess.

-P In the paired-end mode, perform SW to rescue missing hits only but do not try to find hits that fit a proper pair.

bwa paired-end alignment • 3.1k views
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So what was the answer or the guesses?

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