Question: Compare sample RNA-seq data with publicly available micro-array data
0
gravatar for fb
4.9 years ago by
fb0
Netherlands
fb0 wrote:

Hi there,

I would like to compare the transcriptome of my sample to the transcriptomes of several cell types from a database and select the cell type that my sample resembles most. The problem is, the cell type data is, micro-array data, and the data of my sample is RNAseq data.

Do I need to do a micro-array experiment or can I use my RNAseq data?

Thanks!

rna-seq micro-array classifier • 1.7k views
ADD COMMENTlink modified 4.2 years ago by mark.ziemann1.2k • written 4.9 years ago by fb0
1
gravatar for mark.ziemann
4.2 years ago by
mark.ziemann1.2k
Australia/Mebourne/Geelong/Deakin
mark.ziemann1.2k wrote:

This type of data integration meta-analysis has been discussed a few times before.

How To Go About Comparing Rnaseq With Micro Array Expression Data?

Exon Arrays Vs Rna-Seq

ADD COMMENTlink written 4.2 years ago by mark.ziemann1.2k
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