Question: Problem running metavelvet
gravatar for Ivan Romero
4.7 years ago by
Ivan Romero20
Mexico City
Ivan Romero20 wrote:

Hi, im new in all this bioinformatic stuff actually in my lab we are using metavelvet to analyze NGS reads form illumina MySeq as follows


software/velvet_1.2.10/velveth ensamble_metavelv 29 -fasta galaxylastzp4.FASTA

software/velvet_1.2.10/velvetg ensamble_metavelv -exp_cov auto -ins_length 260

software/MetaVelvet-1.2.02/meta-velvetg ensamble_metavelv -ins_length 260 | tee logfile

This is the result in the terminal window:

[meta-velvetg] Check command line options...
    OK. Your command line options seem to be good.

[meta-velvetg] Load meta-graph ...
zsh: segmentation fault  software/MetaVelvet-1.2.02/meta-velvetg ensamble_metavelv -ins_length 260 |
zsh: done                tee logfile


The meta-velvetg.contigs.fa file is not created :(, any idea what im doing wrong?


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