Problem running metavelvet
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Entering edit mode
9.7 years ago
Ivan Romero ▴ 20

Hi, I'm new in all this bioinformatic stuff actually in my lab we are using metavelvet to analyze NGS reads form illumina MySeq as follows

make 'MAXKMERLENGTH=73' 'CATEGORIES=2'
software/velvet_1.2.10/velveth ensamble_metavelv 29 -fasta galaxylastzp4.FASTA
software/velvet_1.2.10/velvetg ensamble_metavelv -exp_cov auto -ins_length 260
software/MetaVelvet-1.2.02/meta-velvetg ensamble_metavelv -ins_length 260 | tee logfile

This is the result in the terminal window:

``` [meta-velvetg] Check command line options... OK. Your command line options seem to be good.

[meta-velvetg] Load meta-graph ... zsh: segmentation fault software/MetaVelvet-1.2.02/meta-velvetg ensamble_metavelv -ins_length 260 | zsh: done tee logfile

The meta-velvetg.contigs.fa file is not created :(, any idea what I'm doing wrong?

Thanks

illumina sequencing next-gen Assembly • 2.7k views
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