Question: Problem running metavelvet
2
gravatar for Ivan Romero
4.7 years ago by
Ivan Romero20
Mexico City
Ivan Romero20 wrote:

Hi, im new in all this bioinformatic stuff actually in my lab we are using metavelvet to analyze NGS reads form illumina MySeq as follows

make 'MAXKMERLENGTH=73' 'CATEGORIES=2'

software/velvet_1.2.10/velveth ensamble_metavelv 29 -fasta galaxylastzp4.FASTA

software/velvet_1.2.10/velvetg ensamble_metavelv -exp_cov auto -ins_length 260

software/MetaVelvet-1.2.02/meta-velvetg ensamble_metavelv -ins_length 260 | tee logfile

This is the result in the terminal window:

[meta-velvetg] Check command line options...
    OK. Your command line options seem to be good.


[meta-velvetg] Load meta-graph ...
zsh: segmentation fault  software/MetaVelvet-1.2.02/meta-velvetg ensamble_metavelv -ins_length 260 |
zsh: done                tee logfile

 

The meta-velvetg.contigs.fa file is not created :(, any idea what im doing wrong?

Thanks
 

ADD COMMENTlink written 4.7 years ago by Ivan Romero20
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2022 users visited in the last hour