Can you please help me with diffbind package.
As I understood I should create a csv file with names of bed files with input, control and peaks bed files of peaksets.
Are all of these files required for analysis? Can I do only with files with peaks? I'm trying to do without initial files (just don't have them) writing a csv file as follows:
SampleID,Peaks 1,2A.peaks.bed 2,3A.peaks.bed 3,5A.peaks.bed
But using this in R I have a mistake:
> sets = dba(sampleSheet="sample.csv") 1 NA raw Error in Summary.factor(c(1L, 1112L, 2223L, 3334L, 4445L, 5556L, 6592L, : max not meaningful for factors Warning: In read.table(samplesheet, sep = ",", stringsAsFactors = F, header = T) : incomplete final line found by readTableHeader on 'sample.csv'