Can you please help me with diffbind package.
As I understood I should create a csv file with names of bed files with input, control and peaks bed files of peaksets.
Are all of these files required for analysis? Can I do only with files with peaks? I'm trying to do without initial files (just don't have them) writing a csv file as follows:
But using this in R I have a mistake:
> sets = dba(sampleSheet="sample.csv")
1 NA raw
Error in Summary.factor(c(1L, 1112L, 2223L, 3334L, 4445L, 5556L, 6592L, :
max not meaningful for factors
In read.table(samplesheet, sep = ",", stringsAsFactors = F, header = T) :
incomplete final line found by readTableHeader on 'sample.csv'