How to Create Haplotype trees from Y-Chromosome SNP data
0
0
Entering edit mode
6.8 years ago
mattbawn ▴ 50

I have 17 SNP calls from Y-Chromosome NGS data. How do I go about trying to construct a phylogenic tree? I have created a script that has tabulated the data regularly as a .csv file containing the coordinates and the reference and alternate nucleotide for each sample. I was trying to use the SNPhylo pipeline:

http://chibba.pgml.uga.edu/snphylo/

but the documentation is rather sparse.

Any ideas, suggestions would be gratefully received.

Thanks,

Matt

 

SNP sequencing Haplotypes • 2.0k views
ADD COMMENT

Login before adding your answer.

Traffic: 946 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6