Question: how to fetch GO categories from Chinese hamster genome
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gravatar for upendrakumar.devisetty
5.6 years ago by
United States
upendrakumar.devisetty360 wrote:

Hi,

I have been trying to generate GO category table for Chinese hamster genome using getgo function in goseq package. Even though chinese hamster is said to be included in the supportedGenomes() function of goseq, i am having trouble generating the GO category table. Does anybody have experience do this.

Here is what i have trying without much success...

genes <- c("EGV95676", "EGW04231", "EGV99641") # example gene list
getgo(genes, "criGri1", "ensGene")

And i get this error - 

Error in library(paste(orgstring, "db", sep = "."), character.only = TRUE) : 
  there is no package called ‘NA.db’

go goseq genome • 1.9k views
ADD COMMENTlink modified 5.5 years ago by Biostar ♦♦ 20 • written 5.6 years ago by upendrakumar.devisetty360
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