I'm using the EMBOSS
transeq tool to translate the first ORF of 26,000 sequences. Since the tool is pretty slow (takes ~1 minute per short sequence) and to make the process parallel, I split the fasta file into smaller files (down to one sequence per file) and then run
transeq on each file. However, the sequences are renamed in the following format:
How could I prevent
transeq from renaming these sequences?
If nothing else works, I'll create a script that manages the translation of each individual sequences and makes sure to rename it after it has been translated.