Question: How is mate alignment which may generate soft-clipping signature implemented in bwa?
gravatar for zhangz.cs
6.1 years ago by
zhangz.cs230 wrote:

Would one please describe the mate alignment algorithm that has been implemented in bwa? Is it kind of modified SW algorithm?

Thank you!

alignment • 1.2k views
ADD COMMENTlink modified 6.0 years ago by Biostar ♦♦ 20 • written 6.1 years ago by zhangz.cs230

Have you read the papers (the bwa mem paper is here)?

ADD REPLYlink written 6.1 years ago by Devon Ryan97k
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