Question: How to create GO dataset from file for S. pombe?!!!
0
gravatar for Parham
5.5 years ago by
Parham1.4k
Sweden
Parham1.4k wrote:

Hi,

I am trying to do GO analysis on my RNA-seq data from S. pombe. Unfortunately the GO annotations for s. pombe are not available on gage database so I have to create myself from a file I guess! I guess because I am not an advance user and just learning everything. So I found these annotations on www.pombe.org, see it in this link. But no matter how much I read the gage manual I couldn't figure out how to load these data into gage for doing the analysis. The template of "go.sets.**" are different from this file obtained from pombase and I don't know how to convert it. Also then I don't know how to create a file like "go.subs.**" in order to separate BP, MF and CC categories. I know this question may look very beginner but please help me with this, since I am stuck at this point for few days. Any more information you need please let me know.

Parham

s.pombe go dataset • 1.2k views
ADD COMMENTlink modified 5.5 years ago • written 5.5 years ago by Parham1.4k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1927 users visited in the last hour