Using GRCH37 with ggbio
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7.2 years ago
Saad Khan ▴ 400

Hi I am trying to use ggbio with R. I am using GRCH37 assembly for my work. In ggbio there is a function called Ideogram.

I would like to use it with GRCH37. The assembly is not available in bioconductor packages usually you can use hg19 just like this.

p.ideo <- Ideogram(genome = "hg19")

I am wondering how can I make it work with GRCH37?

ggbio bioconductor r • 1.7k views
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4
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Aren't hg19 and GRCH37 the same release, only that chromosomes are called slightly different? Hg19 Versus Grch37

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1
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Yep GRCh37 and hg19 are confusingly the same release.

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