What tool(s) would enable me to visualize the effect of a particular residue change on a protein structure? Most tools merely provide a prediction of possible [deleterious] functional effect.
A couple which are useful for pre-computed coding nsSNPs are:
- SNPs3D - easy to use; links to Cn3D-viewable pre-computed variant structures
- StSNP - uses Modeller algorithm, and more updated list of nsSNPs; uses custom structure viewer
However, I want to visualize the residue change due to a novel variant on a structure. Even a suggested workflow in MATLAB, python (scipy+matplotlib) or similar would be useful.