News:Samtools/htslib/bcftools 1.1 released
Entering edit mode
9.8 years ago

For those not on the email list, htslib/samtools/bcftools version 1.1 was just released.

The most major improvements (in my opinion) are:

  • Sorting BAM files with thousands of reference contigs now completes in a reasonable amount of time
  • Fixed samtools calmd memory leak
  • Fixed samtools idxstats when displaying statistics from indices generated by samtools 0.1.x

It should be noted that the idxstats change is actually a change to what was included in the index, which was done incorrectly in version 1.0. Other changes are included in the email I linked to above.

htslib samtools • 2.5k views

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