I used the default command line: eubatch.pl -i in.fasta -q in.qual
and got error saying cannot find path-to-euler/euler_et and a couple of other executives in that dir. However when I checked path-to-euler these exact files are right there.
The error message is below:
sh: /home/software/euler2/euler_et: not found sh: /home/software/euler2/euler_db: not found sh: /home/software/euler2/euler_cons: not found sh: /home/software/euler2/euler_cons: not found
I installed euler2 according to the instructions (http://nbcr.sdsc.edu/euler/euler2/README) and modified perl and $pgms::EULERBIN as instructed. Can anyone who has used this assembler give me some suggestions? Thanks!
Do you check existence of these files/folders in /home/software/euler2 folder?
Yes. They are all there.
Yes, they are all there. But even when I run the executives right from the folder it says "No such file or directory".