I just installed pybedtools on my mac (10.9) as follow:
sudo pip install pybedtools
Then I test the script as recommended for test installing:
import pybedtools a = pybedtools.example_bedtool('a.bed') b = pybedtools.example_bedtool('b.bed') print a.intersect(b)
The last step do not work.
NotImplementedError: "intersectBed" does not appear to be installed or on the path, so this method is disabled. Please install a more recent version of BEDTools and re-import to use this method.
I didn't find someone with the same problem on pybedtools. Does anyone knows the problem?