How to cluster only genes with Cluster 3.0 ?
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9.6 years ago
madkitty ▴ 690

We have set of gene expression (50 genes) measured at different time interval. I want to cluster the genes (not the time!) with Cluster 3.0 and checked these options:

  • Hierarchical clustering :
  • Genes --> Cluster
  • Similarity Metric --> Correlation (uncentered)
  • Clustering method --> I tried "Single linkage" (very ugly dendrogram) and "Complete linkage"
             1h       5h    10h
Gene1        10      15     20
Gene 2       etc..

Though when I load the CTD file in TreeView it clustered the genes, and also reorganized the time stamp.. is there anyway to keep the time stamp (columns) in order?

treeview cluster • 3.4k views
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