Question: PacBio Technology Assemblers
0
gravatar for midox
2.4 years ago by
midox130
Tunisia
midox130 wrote:

hello, 
I need to know the assemblers using PacBio technology like HGAP. 
Do you know other friends? 
thank you for your reply

pacbio long reads assembly • 1.3k views
ADD COMMENTlink modified 11 weeks ago by Picasa270 • written 2.4 years ago by midox130

thank you for your reply. 
do you have a reference (article) on the Falcon? 
and AHA (A Hybrid Assembler) and ALLORA (A Long Read Assembler)? do they use PacBio technology? do I have references conserant these two assemblers because I did not find it, if you have. 
thank you

ADD REPLYlink written 2.4 years ago by midox130
1
gravatar for Noolean
2.4 years ago by
Noolean2.9k
State College, PA, USA
Noolean2.9k wrote:

For example Celera and/or Falcon. Note that by default HGAP uses Celera for assembly step.

ADD COMMENTlink written 2.4 years ago by Noolean2.9k
1
gravatar for rtliu
2.4 years ago by
rtliu1.9k
New Zealand
rtliu1.9k wrote:

Large Genome Assembly with PacBio Long Reads

PacBio-only

  •       HGAP     
  •       HBAR-DTK.
  •       Falcon
  •       PBcR self-correction
  •       Celera® Assembler
  •       Sprai     

Hybrid

  •       pacBioToCA     
  •       ECTools     
  •       Spades     
  •       Cerulean

Gap Filling

  •       PBJelly 2

Scaffolding

  •       AHA
  •       PBJelly 2
ADD COMMENTlink written 2.4 years ago by rtliu1.9k
1
gravatar for Picasa
11 weeks ago by
Picasa270
Picasa270 wrote:

This topic is 2 years old. I am wondering if there are new softwares nowadays and any benchmark ?

ADD COMMENTlink written 11 weeks ago by Picasa270
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